PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974434.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 233aa MW: 27026.2 Da PI: 5.3879

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974434.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.2	4.4e-55	6	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v+ XP_024974434.1 6 LPPGFRFHPTDEELVNYYLKRKIHGQQIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVT 99 79**************************.99**********84335556888*********************************** PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +++++g+kktLv+y+grap+g +tdWvmheyrl XP_024974434.1 100 SQgqNNRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 136 9767777**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MAPVGLPPGF RFHPTDEELV NYYLKRKIHG QQIELDIIPE VDLYKCEPWE LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVTS QGQNNRAIGM KKTLVYYRGR 120 APQGIRTDWV MHEYRLDDKD SHDTFGIQDS YALCRVFKKN GVCVELEDIN GHASMSMVQY 180 SPTVTNDYET MSPDVPVASS SCLDEDDKDE SWMQFITDDP WCSPNSPQQT LTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-127	NAC family protein