PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974513.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 338aa MW: 37750.1 Da PI: 6.5578

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974513.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.4	3.4e-29	155	214	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqKe+ gs+fpr+Y+rCt++ +Cp+kk+v+r ++dp ++e+tY+geH++ XP_024974513.1 155 EDGYTWRKYGQKEILGSKFPRGYFRCTHQklyNCPAKKQVQRLDNDPYTFEVTYRGEHTC 214 7**************************999************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MEEIVSLIFH GGKLVKELEE SLPNIANQPH VLISSCDEIS RVFGNARERL TLAVQDYGTH 60 HESLPQMEVG GGSVPEWLRS SHAMDMGLHE QLAHHQHHGF DAIAGQELGG GNVEAVATDV 120 AQSSLHRPRR RKHEADRRTF RVPAPRMGNT EVPPEDGYTW RKYGQKEILG SKFPRGYFRC 180 THQKLYNCPA KKQVQRLDND PYTFEVTYRG EHTCIMSSTA PSMPPPPSLP EAMTSYPTSH 240 NIPLTTSQPV TQWLSIDVKQ PFGELYSTIA HHNMQMYKSQ SDNIGGGGTG PSSPARYTDY 300 PGVTDLIDTM FNSGSSSNNS MELIFSSEEK KDDREKTN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	132	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	2e-62	WRKY family protein