PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024974533.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 157aa    MW: 18375.2 Da    PI: 11.0653
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024974533.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.6e-19301131199
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       s++l++p +f++++++k   +  ++l+d+ gr W v +  +++  +++l++GW +Fv++++L+ g ++vF++d  s+++++v++f +
  XP_024974533.1  30 RISHQLRIPPDFIKHFDKK--IPGAVILKDLAGRIWHVDI--KQTETGVFLKNGWMRFVNEKRLELGQVMVFRYDT-SSTSFTVRIFGR 113
                     44678********777655..5668***************..999999**************************87.555569999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MGKRGRGRPS KVSSIFNQDP EFFEIFLPNR ISHQLRIPPD FIKHFDKKIP GAVILKDLAG  60
RIWHVDIKQT ETGVFLKNGW MRFVNEKRLE LGQVMVFRYD TSSTSFTVRI FGRNAIKDED  120
QDSKKPFNSV KKEQESVADP IPIRKSKRNR RKPQKYA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-21B3 family protein