PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024974612.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 151aa    MW: 16637.8 Da    PI: 8.4809
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024974612.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.25.9e-4310108199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC ++Cv++pyfp e+p kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+
  XP_024974612.1  10 PCAACKFLRRKCIQGCVFSPYFPPEDPTKFANVHKIFGASNVSKLLNEIAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQKELD 104
                     7*********************************************************************************************9 PP

          DUF260  96 llke 99 
                     ++++
  XP_024974612.1 105 ATNA 108
                     9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    
MASSSHPSAP CAACKFLRRK CIQGCVFSPY FPPEDPTKFA NVHKIFGASN VSKLLNEIAP  60
HQREDAVNSL AYEAEARLKD PVYGCVGAIS VLQRQVLRLQ KELDATNADL IRFSSNQNTL  120
MTPSSSSGSS LQNPHVLPPH YGNYSWNYNP N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.17e-63LBD family protein