PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974651.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 426aa MW: 46542.8 Da PI: 6.6731

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974651.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	44	88	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ XP_024974651.1 44 RERWTEEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 88 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MVCESMAEDR SEGSVSNTVK NDQFMSADDY APKARKPYTI TKQRERWTEE EHKKFLEALK 60 LYGRAWRRIE EHVGTKTAVQ IRSHAQKFFS KVVRESTSGD ASEVKPIEIP PPRPKRKPMH 120 PYPRKLSAPL KTGGHHARST SPNSSGSDQE NQSPTSVLSA GGSNMFALGD SCSPNPGSSP 180 VSSANGVKPG GSSRFEPDLS PEENESSPTV QEDDGPIPMK LDSCGEEKEK EKGFADEGSP 240 EAGSAQSLKL FGKTVVVTDP NHRPSSPNVA VDPSEGNISI VNLIPQNLMP ISSLPCGAPV 300 YYMQFLDEHS DSSVLRSSTT AAAPWWSLYG GITYPVMQPC NPATEMQNEC SNNSESENGG 360 ANEEQKKAFL VIGSERSAFT KQYGGGKKKD TCIKGFVPYK RCLAQRESHS HSTGEEREEQ 420 RVRLCL

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MVCESMAEDR SEGSVSNTVK NDQFMSADDY APKARKPYTI TKQRERWTEE EHKKFLEALK  60
LYGRAWRRIE EHVGTKTAVQ IRSHAQKFFS KVVRESTSGD ASEVKPIEIP PPRPKRKPMH  120
PYPRKLSAPL KTGGHHARST SPNSSGSDQE NQSPTSVLSA GGSNMFALGD SCSPNPGSSP  180
VSSANGVKPG GSSRFEPDLS PEENESSPTV QEDDGPIPMK LDSCGEEKEK EKGFADEGSP  240
EAGSAQSLKL FGKTVVVTDP NHRPSSPNVA VDPSEGNISI VNLIPQNLMP ISSLPCGAPV  300
YYMQFLDEHS DSSVLRSSTT AAAPWWSLYG GITYPVMQPC NPATEMQNEC SNNSESENGG  360
ANEEQKKAFL VIGSERSAFT KQYGGGKKKD TCIKGFVPYK RCLAQRESHS HSTGEEREEQ  420
RVRLCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	2e-58	MYB_related family protein