PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974652.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 276aa MW: 30132.5 Da PI: 8.4582

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974652.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	214	236	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C + Fs L H ++ H XP_024974652.1 214 QCPICYMKFSKAAALIDHVQKvH 236 7******************9988 PP
2	zf-C2H2	19.7	2.4e-06	248	270	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F++++ L++H + H XP_024974652.1 248 VCPKCSKGFRDPMALVQHVEReH 270 7*****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
MGTPAFPNLG KHCSVDDCKI IDFLPFTCDC CNKVFCLDHR SYISHQCPKA NKNNRTVVIC 60 PLCAKGVHLV LDQDPNITWE SHVNTDCDPS NYEKVTKKKK CPVRGCRETL TFSNTIKCRD 120 CTIEHCLKHR LGLDHGCPGP KKPEPSFPYW GFSNSTKQTH APVSSSSSSS SSGWTTSLLS 180 AVSSLMISND KTDGAGPSGG ASRNGGGASG QVEQCPICYM KFSKAAALID HVQKVHEKKG 240 VMKVTIDVCP KCSKGFRDPM ALVQHVEREH RGMSQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-102	C2H2 family protein