PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024974875.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 26111.6 Da    PI: 9.7275
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024974875.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.11.3e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien++nrqvt+skRrngi+KKA+EL vLCda++++i+fs+tgk++ey+s
  XP_024974875.1  9 KKIENNTNRQVTYSKRRNGIFKKAHELTVLCDAKISLIMFSNTGKFHEYIS 59
                    68***********************************************86 PP
2K-box81.32.2e-2771166195
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhl.lGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                     yq++ g +l+++++e++++ ++kLk+ ++ L++e+R++ lGedL+ L++++L  Leqq+++sl+ +R++K++++++q+++ +k+ k+l+++n +L
  XP_024974875.1  71 YQTTLGFDLWSSHYERMKETMKKLKDSNNRLRKEIRQRvLGEDLDGLDVNDLTILEQQMQDSLTVVRERKYHVIKTQTDTCRKRVKNLEQRNGNL 165
                     667777789**************************98538****************************************************999 PP

           K-box  95 r 95 
                     +
  XP_024974875.1 166 Q 166
                     7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MGRGKIEIKK IENNTNRQVT YSKRRNGIFK KAHELTVLCD AKISLIMFSN TGKFHEYISP  60
STTTKKMYDM YQTTLGFDLW SSHYERMKET MKKLKDSNNR LRKEIRQRVL GEDLDGLDVN  120
DLTILEQQMQ DSLTVVRERK YHVIKTQTDT CRKRVKNLEQ RNGNLQLGYD TVRHLEKKYA  180
TGENRGEYES TITYSNGVPD LYGFCAHPNN IPHGYEPHDP RIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-67MIKC_MADS family protein