PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024974923.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family TCP
Protein Properties Length: 328aa    MW: 36467.9 Da    PI: 10.1681
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024974923.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.92.2e-39962513132
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg...... 88 
                      kkdrhski T++g+RdRRvRls+++ ++fF Lqd LGfdk+s t++WL++++k+aik+l++   +++s++   ++ +++  ++ s+ +      
  XP_024974923.1  96 SKKDRHSKIFTAQGPRDRRVRLSIDISRKFFGLQDLLGFDKASRTLDWLFTKSKTAIKDLVEEMKQHSSSSaltDQCEEVFLGKGSGDHlekikg 190
                     69*************************************************************55555444455555555555533333666777 PP

             TCP  89 ...............kaaksaakskksqksaasalnlak..esrakarararertrekmri 132
                                    +++k+++k+  ++++a  + nla+  +sra+arararert ek ++
  XP_024974923.1 191 kkskkppitkcgnggSKRKTTKKTTTQKQKAGFHVNLAArsQSRAEARARARERTIEKLQK 251
                     7777899999999984444444555555555555666655699**************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MYNSSSNPFP SSIHGFPPAS AASFYGHEKD GVYFHHHPPF VAGDCSFHHV TTTAIVPPLL  60
PPAIKGSEVV GYCDNSRNHF SDSVISFPSK TRVSGSKKDR HSKIFTAQGP RDRRVRLSID  120
ISRKFFGLQD LLGFDKASRT LDWLFTKSKT AIKDLVEEMK QHSSSSALTD QCEEVFLGKG  180
SGDHLEKIKG KKSKKPPITK CGNGGSKRKT TKKTTTQKQK AGFHVNLAAR SQSRAEARAR  240
ARERTIEKLQ KLRSESENVV GDQNYCYHLQ SNCGNQIQSQ SNQDVKIGES AAMDQKLSKP  300
YSLLYSSHYS CFVESKDSTS QFKNSTTH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-26TCP family protein