PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974962.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 396aa MW: 43418.8 Da PI: 8.6816

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.9e-08	92	113	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C ff tG C++G++C+F+H+ XP_024974962.1 92 DCLFFVHTGSCSFGSSCRFNHP 113 6999999**************8 PP
2	zf-CCCH	31.8	2.4e-10	137	158	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + +C+f+++ G+CkyG++C+F+H XP_024974962.1 137 RTPCKFYLA-GICKYGASCRFNH 158 579****.*********** PP
3	zf-CCCH	37.2	4.8e-12	182	206	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f++rtG C +G+ CkF+H++ XP_024974962.1 182 EKICSFYMRTGLCGFGAACKFHHPE 206 689********************96 PP
4	zf-CCCH	20.2	1.1e-06	346	371	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ +G+CkyG+ C F H++ XP_024974962.1 346 GRKVCWHYDSSGECKYGADCIFDHPQ 371 7888999999**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MATSDNNNST SKIKFMWNNT NNRQVLSSPI TVVDHHDHRL HLQPQNVGFE SKVKSDVLPE 60 GSGKSRAAAG GGGNGNSSMQ THQYPVRSDA KDCLFFVHTG SCSFGSSCRF NHPSPVDDDK 120 ERNNGRHSGK SFENSPRTPC KFYLAGICKY GASCRFNHAM PSAELMQLQQ YNSLALPFRL 180 GEKICSFYMR TGLCGFGAAC KFHHPEPVFI KGPKNRNPYA SREAMKYTNG SARITNGGYI 240 IQFPDSPQQY IATPMVDHSS FQYMPSPDYG WNGYQVPQLN QEIQLSSSAV QVANFSSVAP 300 AVVDAKNTAD FPPLSRPLVL SKPVVELPKT SKPLVLNEVG LPMRPGRKVC WHYDSSGECK 360 YGADCIFDHP QKSVEKGCTS KSGLGGAGET LGTEEK

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MATSDNNNST SKIKFMWNNT NNRQVLSSPI TVVDHHDHRL HLQPQNVGFE SKVKSDVLPE  60
GSGKSRAAAG GGGNGNSSMQ THQYPVRSDA KDCLFFVHTG SCSFGSSCRF NHPSPVDDDK  120
ERNNGRHSGK SFENSPRTPC KFYLAGICKY GASCRFNHAM PSAELMQLQQ YNSLALPFRL  180
GEKICSFYMR TGLCGFGAAC KFHHPEPVFI KGPKNRNPYA SREAMKYTNG SARITNGGYI  240
IQFPDSPQQY IATPMVDHSS FQYMPSPDYG WNGYQVPQLN QEIQLSSSAV QVANFSSVAP  300
AVVDAKNTAD FPPLSRPLVL SKPVVELPKT SKPLVLNEVG LPMRPGRKVC WHYDSSGECK  360
YGADCIFDHP QKSVEKGCTS KSGLGGAGET LGTEEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	7e-44	C3H family protein