PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975189.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 225aa    MW: 25952 Da    PI: 10.0298
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975189.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.2e-12103144351
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                      +GV++ k + +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  XP_024975189.1 103 MRGVYY-K-NMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 144
                     79**96.5.7*********4.....5********************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MVSIRRQRLI KLYGRGPSLD FLSCENGQTS GNWAQNTRQV SMHPTPSVDI DQSIEEKAKY  60
EEPESSNVNE SSSSNKQPIQ HPVFKRRKRH RRKHFENQEP CIMRGVYYKN MKWQAAIKVD  120
KKQIHLGTVG SQEEAARLYD RAAFMCGREP NFELTVEEKD ELSKLSWDEF LTMTRSAINS  180
KKHQRRVTSR MKFEHPSQNN GERKAKVDRG GNSFSASDDA ETSAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.26e-46ERF family protein