PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975206.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 442aa MW: 49037.4 Da PI: 5.3435

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975206.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.9	1.1e-33	246	300	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++LGGse+AtPk +l+ mkv+gLt++hvkSHLQkYR+ XP_024975206.1 246 KPRMRWTPELHEAFVEAVNKLGGSERATPKGVLKQMKVEGLTIYHVKSHLQKYRT 300 79****************************************************8 PP
2	Myb_DNA-binding	56.3	7.4e-18	248	299	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e +v+av++lGg t+k + + m +g+t +++ks++qky+ XP_024975206.1 248 RMRWTPELHEAFVEAVNKLGGSeraTPKGVLKQMKvEGLTIYHVKSHLQKYR 299 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MEAQPALSFQ RSGARQLSNH GAPGARSSPL PVRPVTLEEK YPKFPESQQM SMGREFMPQN 60 FTALPSLSST SRAVGHMFSS ASGMSXDLQF SSQETHSERT PFISQSSGIL QSTASSQYMK 120 ENNNSSWCTD SLPDFLDYPQ NTPIPSSNLE HSQSATCIMP SEDLGKQNDW QDWADQLITD 180 DDAMTPDWNE ILIDTGIADP EPKMAYHVGG SSTNSMQVQQ LIVPPSSEEA CNTMTPSPCG 240 NGPQSKPRMR WTPELHEAFV EAVNKLGGSE RATPKGVLKQ MKVEGLTIYH VKSHLQKYRT 300 ARYKPEPSAE GPSERKTTVE DFSSLELKTG LEITEALRLQ MEVQKRLHEQ LEIQRNLQLR 360 IEEQGRYLQM MFEKQCKSGI DKLKPSSSTM DLTNETPNSP TRTEPASSQA DPNGPGPNPV 420 VHRPSEDDSC GSQPSKRAKV KE

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MEAQPALSFQ RSGARQLSNH GAPGARSSPL PVRPVTLEEK YPKFPESQQM SMGREFMPQN  60
FTALPSLSST SRAVGHMFSS ASGMSXDLQF SSQETHSERT PFISQSSGIL QSTASSQYMK  120
ENNNSSWCTD SLPDFLDYPQ NTPIPSSNLE HSQSATCIMP SEDLGKQNDW QDWADQLITD  180
DDAMTPDWNE ILIDTGIADP EPKMAYHVGG SSTNSMQVQQ LIVPPSSEEA CNTMTPSPCG  240
NGPQSKPRMR WTPELHEAFV EAVNKLGGSE RATPKGVLKQ MKVEGLTIYH VKSHLQKYRT  300
ARYKPEPSAE GPSERKTTVE DFSSLELKTG LEITEALRLQ MEVQKRLHEQ LEIQRNLQLR  360
IEEQGRYLQM MFEKQCKSGI DKLKPSSSTM DLTNETPNSP TRTEPASSQA DPNGPGPNPV  420
VHRPSEDDSC GSQPSKRAKV KE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	1e-102	G2-like family protein