PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975213.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 234aa    MW: 27676.3 Da    PI: 6.6302
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-1335711148
                     HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     llv++vkq+G ++W+ Ia++++  R +kqc++rw++yl
   XP_024975213.1 35 LLVQLVKQHGDRNWACIAEKFP-LRAGKQCRDRWLNYL 71
                     89********************.9************97 PP
2Myb_DNA-binding55.51.3e-1777119145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++e+d+ll++++kq+G++ W+ Iar+++  R+++++k++w+
   XP_024975213.1  77 KNAWSEEDDKLLIELHKQFGNK-WAYIARMFP-ERSENSIKNHWN 119
                      689*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MEKPLMYQPI WANHSQLSKS MKTFSLNLHL KVNRLLVQLV KQHGDRNWAC IAEKFPLRAG  60
KQCRDRWLNY LRPNIMKNAW SEEDDKLLIE LHKQFGNKWA YIARMFPERS ENSIKNHWNA  120
TKRRQLSMNN NKNIKYPSLL KDYITSLTSS SSDDQINIQQ EPPVADTTTA PLEQPESSVF  180
DSIHHQSETS FWSDSVIGYK PEMVFDQNDF EFDLVDQLQF DPNAEREFLD MFCW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-43MYB family protein