PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975223.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 396aa MW: 45298.7 Da PI: 6.2775

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975223.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.3	5.5e-31	223	277	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH+rFve+v+ LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ XP_024975223.1 223 KTRIRWTQDLHDRFVECVSCLGGAEKATPKAILKLMDSEGLTIFHVKSHLQKYRI 277 68****************************************************7 PP
2	Myb_DNA-binding	43.4	7.8e-14	227	276	3	48
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 rWT+++++++v++v lGg t+k+I + m +g+t ++ks++qky+ XP_024975223.1 227 RWTQDLHDRFVECVSCLGGAekaTPKAILKLMDsEGLTIFHVKSHLQKYR 276 9***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MNTLKIGCNH EMVYNMKSRE FGGATQQQPW QVGITILPSE MEAKETHQDH QQQQQEQDHQ 60 RQQMITYRQE NSSCSKTIME QIGSPSSALY ATEKYLGFSQ NGVHLSFNDE TDVSSVPQMK 120 FDAYMHPLEK PRDSFSFGSY ERPYKMRCNN PSERDQIMEL KRKLLDESDT SDWRQSQPSI 180 CYDGNQDLGG QFGHSGQTGR PPSGQVSINC ANPGTVGTIM PSKTRIRWTQ DLHDRFVECV 240 SCLGGAEKAT PKAILKLMDS EGLTIFHVKS HLQKYRIAKY LPESAKGNSE KRTSMDTISQ 300 IENITGMQFK DALQMQLAVQ RQLHEQLEIQ RNLQLRIEEQ AKQLKKMFDQ QQKANKSQNS 360 EITSLHDDHH AMNLEDDDIL NLEVDSENTL FPSKIS

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MNTLKIGCNH EMVYNMKSRE FGGATQQQPW QVGITILPSE MEAKETHQDH QQQQQEQDHQ  60
RQQMITYRQE NSSCSKTIME QIGSPSSALY ATEKYLGFSQ NGVHLSFNDE TDVSSVPQMK  120
FDAYMHPLEK PRDSFSFGSY ERPYKMRCNN PSERDQIMEL KRKLLDESDT SDWRQSQPSI  180
CYDGNQDLGG QFGHSGQTGR PPSGQVSINC ANPGTVGTIM PSKTRIRWTQ DLHDRFVECV  240
SCLGGAEKAT PKAILKLMDS EGLTIFHVKS HLQKYRIAKY LPESAKGNSE KRTSMDTISQ  300
IENITGMQFK DALQMQLAVQ RQLHEQLEIQ RNLQLRIEEQ AKQLKKMFDQ QQKANKSQNS  360
EITSLHDDHH AMNLEDDDIL NLEVDSENTL FPSKIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	4e-66	G2-like family protein