PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975224.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 449aa    MW: 50127.4 Da    PI: 6.017
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975224.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS297.92.5e-91574462373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfs 94 
                     ++lL++cA+a++++d++l q++L+ l+++a +dgd++qRl+  f++AL ar a+  +++ l +al+ s+ + ++++ ++  l  f++++P+++f+
  XP_024975224.1  57 EQLLVRCANAIETNDATLSQQILWVLNNIAPSDGDSNQRLTCGFLRALIARAAKtgTCKMLTAALSNSNITIQTHKFSIIELASFVDLTPWHRFG 151
                     79***************************************************9333444444444444444445555555566*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl..... 181
                     + +aN aIleaveg ++vHiiD+++++++Q p+L++a+a + egpp +++T  g+ e +      ++ee+g +L +fA++ ++ +ef+v+     
  XP_024975224.1 152 FTAANAAILEAVEGYSTVHIIDLSLTHCMQIPTLIDAMAGKLEGPPVVKLTIAGATEDVppmLDLSYEELGIKLVNFARSRNIILEFTVIpsssl 246
                     ****************************************************999887798888999***********************66544 PP

            GRAS 182 ..vakrledleleeLrvkp.......gEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                        ++ +e l+l+     +       +Eal++n++++lh++++e+ +++       +r  +Lk+++sl+P++vv+++++ad +s++++ r+ +a+
  XP_024975224.1 247 dgFSSLIEHLKLQ-----TlvhgnetNEALVINCHMMLHYIPEETPTTPFsfedatPRALFLKQIRSLNPTLVVLADEDADFTSTNLVCRLRSAF 336
                     4444445555566.....44444478****************998877544555778999*********************************** PP

            GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                     +y +  +d +++ lp+ s++r+++E+  + ++i+nv+a+eg++r+er e  ++W +r+++ GF+ v ++e++++++k +l +++  g+ +++e++
  XP_024975224.1 337 NYLWIPYDIVDTFLPKGSKQRQWYEAD-ICWKIENVIAQEGSHRVERLEPRSRWVHRMRNTGFRGVGFGEDMVAEVKGMLDEHA-AGWGLKKEED 429
                     ***************************.********************************************************.8999****** PP

            GRAS 357 slvlgWkdrpLvsvSaW 373
                      lvl+Wk++++v+++aW
  XP_024975224.1 430 DLVLTWKGHNVVFATAW 446
                     ***************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    
MMQFTETLPP PLHQTTKPCQ NFATSVNPNQ THRTRPWPGF PAPNKPLGTF GDANCMEQLL  60
VRCANAIETN DATLSQQILW VLNNIAPSDG DSNQRLTCGF LRALIARAAK TGTCKMLTAA  120
LSNSNITIQT HKFSIIELAS FVDLTPWHRF GFTAANAAIL EAVEGYSTVH IIDLSLTHCM  180
QIPTLIDAMA GKLEGPPVVK LTIAGATEDV PPMLDLSYEE LGIKLVNFAR SRNIILEFTV  240
IPSSSLDGFS SLIEHLKLQT LVHGNETNEA LVINCHMMLH YIPEETPTTP FSFEDATPRA  300
LFLKQIRSLN PTLVVLADED ADFTSTNLVC RLRSAFNYLW IPYDIVDTFL PKGSKQRQWY  360
EADICWKIEN VIAQEGSHRV ERLEPRSRWV HRMRNTGFRG VGFGEDMVAE VKGMLDEHAA  420
GWGLKKEEDD LVLTWKGHNV VFATAWVPT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein