PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975245.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 645aa MW: 72327.1 Da PI: 9.0518

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975245.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.7	1.1e-07	544	593	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_024975245.1 544 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 593 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence
MVLQKRLEYG FNGYQVPPTP RAARSATRRV PSWKKAEENN KQMCAFDLLA TVAGKLLQEG 60 GEETEMVKES TTKPEQQTIE DDPSSNVNIC DQGSCNRSFF VSEIISQAPV MDELKDCLHP 120 QHDTYSGPSS GITVSDCSEK VLSVEKGKIP FSCKVDEKNS KQMITNEAPK PPVVHNIDNN 180 VKLPFSKDHT TRGPLPLCQD NVSLGVRDDD ENSSGVTRVP NKTFKPPPRI GDRRIRRLLA 240 SKYWKAAPKL NDEVHCDADE ELKAVYCNRK TCYKRQRSLK DYPFKKRRLY ELDNFSNSDD 300 VVNSEERYSP PQKDSTENGT GLGVKSEGGM KTSGFVAKQN PAFQPRDSHV KLKIKSFRVP 360 ELFFELPKTA TIGSLKRTVM EAVTSILSGE IHVGVMLQGK KIRDDEKTLL QTGIHNKLDA 420 LGFTLEPNQL QAPSTLCPED QSFGLTPDMP KPLIRYTPAP TVANQLVVQP EVSDASPDPP 480 VTNFSNLIES DHDSAPSPPD MSMDNKSGSD SRALVTVPAM NPRALAVVPM RKSKRSEVAQ 540 RRIRRPFSVS EVEALVQAVE KLGTGRWRDV KLRAFDNAKH RTYVDLKDKW KTLVHTARIS 600 PQQRRGEPVP QELLDRVLAA HAYWSHHQAK QQFKQPQQPE TCRLL

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence

MVLQKRLEYG FNGYQVPPTP RAARSATRRV PSWKKAEENN KQMCAFDLLA TVAGKLLQEG  60
GEETEMVKES TTKPEQQTIE DDPSSNVNIC DQGSCNRSFF VSEIISQAPV MDELKDCLHP  120
QHDTYSGPSS GITVSDCSEK VLSVEKGKIP FSCKVDEKNS KQMITNEAPK PPVVHNIDNN  180
VKLPFSKDHT TRGPLPLCQD NVSLGVRDDD ENSSGVTRVP NKTFKPPPRI GDRRIRRLLA  240
SKYWKAAPKL NDEVHCDADE ELKAVYCNRK TCYKRQRSLK DYPFKKRRLY ELDNFSNSDD  300
VVNSEERYSP PQKDSTENGT GLGVKSEGGM KTSGFVAKQN PAFQPRDSHV KLKIKSFRVP  360
ELFFELPKTA TIGSLKRTVM EAVTSILSGE IHVGVMLQGK KIRDDEKTLL QTGIHNKLDA  420
LGFTLEPNQL QAPSTLCPED QSFGLTPDMP KPLIRYTPAP TVANQLVVQP EVSDASPDPP  480
VTNFSNLIES DHDSAPSPPD MSMDNKSGSD SRALVTVPAM NPRALAVVPM RKSKRSEVAQ  540
RRIRRPFSVS EVEALVQAVE KLGTGRWRDV KLRAFDNAKH RTYVDLKDKW KTLVHTARIS  600
PQQRRGEPVP QELLDRVLAA HAYWSHHQAK QQFKQPQQPE TCRLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	274	289	KRQRSLKDYPFKKRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-146	MYB_related family protein