PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975285.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 533aa MW: 58721.5 Da PI: 6.8297

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975285.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.5	1.8e-14	241	300	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g XP_024975285.1 241 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 300 57*****************666664478446******99***********98 PP
2	AP2	50.2	6.6e-16	343	394	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_024975285.1 343 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 394 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MARENNWLSF SLSPMEMFTS STSQPQQYFF NDNFYANGWA NNGKSQTMYT DGDNGNGQGE 60 VKDGGDSPLF RSFMESHIHQ QQAPKLEDFL GGDINININT TTATATAASH PFRYSDGSQT 120 ETQDSSSLTH IYDGSSSVYF TEQQDLKAIA TAGFPTFSTN SGSEVDDSAT QMTEFVGQSI 180 ESGNELAYAQ CPMNALSLGI TTTAGGGTTH RSSDQKAVVA VDSAAQNNCK KINDTFGQRT 240 SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQVYLGG YDKEDKAARA YDLAALKYWG 300 PTATTNFPVA NYATELEDMK NSTKQEFIAS LRRKSSGFSR GASIYRGVTR HHQQGRWQAR 360 IGRVAGNKDL YLGTFATEEE AAEAYDIAAI KFRGMNAVTN FEMKRYDVEA ISNSSLPIGG 420 SAKRLKISLE AAAEQKPSLI ANHHHHHHHH LQQPQYSSGN SSSSISFATI PPVSAIPYAM 480 PFDPNYHQNF FHHLHPNNGG PPETSGSLSS VGNQMALLPP PAAEFFIWPH QSY

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MARENNWLSF SLSPMEMFTS STSQPQQYFF NDNFYANGWA NNGKSQTMYT DGDNGNGQGE  60
VKDGGDSPLF RSFMESHIHQ QQAPKLEDFL GGDINININT TTATATAASH PFRYSDGSQT  120
ETQDSSSLTH IYDGSSSVYF TEQQDLKAIA TAGFPTFSTN SGSEVDDSAT QMTEFVGQSI  180
ESGNELAYAQ CPMNALSLGI TTTAGGGTTH RSSDQKAVVA VDSAAQNNCK KINDTFGQRT  240
SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQVYLGG YDKEDKAARA YDLAALKYWG  300
PTATTNFPVA NYATELEDMK NSTKQEFIAS LRRKSSGFSR GASIYRGVTR HHQQGRWQAR  360
IGRVAGNKDL YLGTFATEEE AAEAYDIAAI KFRGMNAVTN FEMKRYDVEA ISNSSLPIGG  420
SAKRLKISLE AAAEQKPSLI ANHHHHHHHH LQQPQYSSGN SSSSISFATI PPVSAIPYAM  480
PFDPNYHQNF FHHLHPNNGG PPETSGSLSS VGNQMALLPP PAAEFFIWPH QSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	1e-154	AP2 family protein