PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975338.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 253aa    MW: 29207.1 Da    PI: 7.6344
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975338.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-161360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed ll++++k++G g W++++ + g++R++++c++rw++yl
   XP_024975338.1 13 KGAWTAQEDMLLKNCIKKYGEGKWHLVPLKAGLRRCRNSCRLRWLNYL 60
                     79********************************************97 PP
2Myb_DNA-binding44.14.9e-1466111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg + ++E +l ++++k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_024975338.1  66 RGGFEEDEVDLMLRLHKLLGNR-WSLIAGRIP-GRTANDVKNYWNTHL 111
                      677899****************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MKHVSNTSLE LKKGAWTAQE DMLLKNCIKK YGEGKWHLVP LKAGLRRCRN SCRLRWLNYL  60
RPNIKRGGFE EDEVDLMLRL HKLLGNRWSL IAGRIPGRTA NDVKNYWNTH LRSRAKQQKK  120
EPQDAKSSED HMMVTVIKPQ PHTLSKPLSW FKGDNKNAET HDDGNIIRLS NDGVGNKYNM  180
SSELISSPVV LDDTINEFLK ELFDEEEKAI DSEIGWSFDG SQIEKKALNV TEDNENSLFD  240
FSSDEFMWNL LNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.19e-59MYB family protein