PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975344.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 252aa    MW: 28399.6 Da    PI: 6.1544
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975344.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-184093356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    k+++++ eq+++Le+ Fe  +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  XP_024975344.1 40 KKRRLNLEQVKALEKSFELGNKLEPERKTQLARALGLQPRQVAIWFQNRRARWK 93
                    4557899**********************************************9 PP
2HD-ZIP_I/II128.72.4e-4139129191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ekkrrl+ eqvk+LE+sFe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr+++++k++n++L++ +++L++el
  XP_024975344.1  39 EKKRRLNLEQVKALEKSFELGNKLEPERKTQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFESVKADNDALKNLNKKLHAEL 129
                     69**************************************************************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MRRSMSYSGM ERCEETRAGG GGGGADDDMS EDDGSQLGEK KRRLNLEQVK ALEKSFELGN  60
KLEPERKTQL ARALGLQPRQ VAIWFQNRRA RWKTKQLEKD YDVLKRQFES VKADNDALKN  120
LNKKLHAELL AVKGGESNGI RPINLNKETE GSWSNGSENS CDLNTVTGTM TPSEESPIFY  180
TQISNNIYPN MTSSIGPNSG LTQLLQNPST TDLLNQRLNQ TVGNESFCNM FNAIEDQPAF  240
WPWPEQHPQH LH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-68HD-ZIP family protein