PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975350.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 444aa MW: 48785.9 Da PI: 8.2035

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975350.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.7	4.5e-32	256	309	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_024975350.1 256 PRMRWTSTLHSRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 309 9****************************************************7 PP
2	Myb_DNA-binding	46.7	7.1e-15	257	308	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ XP_024975350.1 257 RMRWTSTLHSRFVHAVELLGGHeraTPKSVLELMDvKDLTLAHVKSHLQMYR 308 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MPLEGIFIEP PPSSSSSNPL PDLSLNISLP NTSSLSSSSI RGNIDSPSKS NTLHQQTYTD 60 LSLTNPSRNL ATSLAQRDQD NPQNPFLHHH HLNHHHIYNQ QPNSSNTQNL NHLNQGVSLL 120 DVSDCLRPIK GIPVYHNHPF PFLPNLDHSS LEKDPKMCFY PSSSTSTSPY FGASGGHMPF 180 LNPGLNGPSS SGYRVPGGCG SGGGTRFTGL SSSYQHHHHY HNQYGGGGPT SHEVSHGLMR 240 SRFLPKLPAK RSMRAPRMRW TSTLHSRFVH AVELLGGHER ATPKSVLELM DVKDLTLAHV 300 KSHLQMYRTV KTTDKPAASS GQSDGSGEDD ISTMGSGGLR RFTDQRGSAD LQESDYPNYS 360 ATATATTTLW SNSSSNREGW LQTNSDMNDL RPSSTMLRQR SASQQVEECD PSRPKSCLGS 420 SLDQKNPCLE FTLGRPDWLQ KERN

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MPLEGIFIEP PPSSSSSNPL PDLSLNISLP NTSSLSSSSI RGNIDSPSKS NTLHQQTYTD  60
LSLTNPSRNL ATSLAQRDQD NPQNPFLHHH HLNHHHIYNQ QPNSSNTQNL NHLNQGVSLL  120
DVSDCLRPIK GIPVYHNHPF PFLPNLDHSS LEKDPKMCFY PSSSTSTSPY FGASGGHMPF  180
LNPGLNGPSS SGYRVPGGCG SGGGTRFTGL SSSYQHHHHY HNQYGGGGPT SHEVSHGLMR  240
SRFLPKLPAK RSMRAPRMRW TSTLHSRFVH AVELLGGHER ATPKSVLELM DVKDLTLAHV  300
KSHLQMYRTV KTTDKPAASS GQSDGSGEDD ISTMGSGGLR RFTDQRGSAD LQESDYPNYS  360
ATATATTTLW SNSSSNREGW LQTNSDMNDL RPSSTMLRQR SASQQVEECD PSRPKSCLGS  420
SLDQKNPCLE FTLGRPDWLQ KERN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	5e-57	G2-like family protein