PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975352.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 525aa    MW: 58138.4 Da    PI: 5.1343
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975352.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.81.5e-951655242374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     v+ L+++Ae++++++l+laq +Larl+++ +sp+g+++qR+a+yf+eAL++ +++      ++  ++++s+++ +++++a+k+fs vsPi+ fs+
  XP_024975352.1 165 VDELIRIAECFETQSLQLAQVILARLNQRlCSPNGKALQRAAFYFKEALQHLITG------STRLTQSSSSSEIVQAIKAYKTFSTVSPIPMFSN 253
                     678*************************99*************************......4555556666789********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +taNqaIleav+g+  vH+iDfdi+ G++W++++++La+++     ++p +RiT+v+++e    +e + ++++L +fA  l+++f+++++ ++++
  XP_024975352.1 254 FTANQAILEAVDGAMIVHVIDFDIGIGGHWASFMKELAEKAenrkVNSPAFRITAVVPEE--YVTESRLIRDNLFQFALDLKLRFDIDFVSVQTF 346
                     **************************************9885544669**********66..999999*************************** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpre 278
                     e l+++++++  gE++aV l   ++r             +++k ++++sP+v+v+v+ e  +  +++ F + ++e le+ys++++sl +a+++  
  XP_024975352.1 347 EHLSFRAIKFMDGEMMAVLLTPTIFRRI---------GADFIKDLRQISPNVIVHVDGEglMGGGTSFFRQTVIEGLEFYSTILESLeAANVGIG 432
                     **********************999998.........357*******************5444488999******************87888887 PP

            GRAS 279 s...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                         ++ +k+E ++l ++i  +v ++g++       +  Wre++++aG +pv  s++a  qa++llr+++++g++v +++g++vl+W+drpLv++
  XP_024975352.1 433 VgggDWLRKIEIFVLLPKIIAAVGAAGRH-------VTPWREAFSRAGIRPVGQSQFADFQAECLLRRIQVRGFHVAKRQGEMVLCWHDRPLVAT 520
                     77789999***********9999999998.......79********************************************************* PP

            GRAS 371 SaWr 374
                     SaWr
  XP_024975352.1 521 SAWR 524
                     ***8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    
MKLPFASQQN NLSSPDVKQQ IIGAAAAAGA AAAAGRYEPK SVLDICRSPP GKTSEFDCVD  60
RNSIVLSSSE DPLPLDNYEH GIVTQFEEWD SLMNELGLHD DSAKSAFLSE LPDLPPVQPK  120
VTAPTMSLFL QSDFENPNPN PNPNPNPNPN PLDFMIDNGN EFDFVDELIR IAECFETQSL  180
QLAQVILARL NQRLCSPNGK ALQRAAFYFK EALQHLITGS TRLTQSSSSS EIVQAIKAYK  240
TFSTVSPIPM FSNFTANQAI LEAVDGAMIV HVIDFDIGIG GHWASFMKEL AEKAENRKVN  300
SPAFRITAVV PEEYVTESRL IRDNLFQFAL DLKLRFDIDF VSVQTFEHLS FRAIKFMDGE  360
MMAVLLTPTI FRRIGADFIK DLRQISPNVI VHVDGEGLMG GGTSFFRQTV IEGLEFYSTI  420
LESLEAANVG IGVGGGDWLR KIEIFVLLPK IIAAVGAAGR HVTPWREAFS RAGIRPVGQS  480
QFADFQAECL LRRIQVRGFH VAKRQGEMVL CWHDRPLVAT SAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-137GRAS family protein