PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975421.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 691aa MW: 76287.5 Da PI: 9.5703

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.9	2.7e-09	22	69	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrw 44 +W t+E++ll+ av+++G+++W++I++++ +t+ +c +++ XP_024975421.1 22 AWGTWEELLLAYAVNRYGTKSWDSISSELRkrssapILLTPHHCEEKY 69 7*****************************777777446777777666 PP

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence
MAKSDQEREP EDTKDSPPAT AAWGTWEELL LAYAVNRYGT KSWDSISSEL RKRSSAPILL 60 TPHHCEEKYG ELKRRFNQSD DDDVDMDDGS DNTTTAIPWL EELRKLRVLE LQRELENYDL 120 YISSLQLKVK KLTEESEKNG GETKKKADLG QRNEEIELKK AEEAKNETPE PVVSGDEDSD 180 RDNQSVNGSN GNLETGVEKS ENENENEASP GDEKPESAAL SPVREEDSCN GRPDGKEPVK 240 TEPDGEASEA PESIAESKSE GTMKENSDVQ SSASKSRKER VDRVRRGTSK EDEREIEDQS 300 TDSIPVRSLP LVDFLHKLQK LGSPIFERRL DRQEKLRYKN LIRQHIDYEI LQTRLKEGWY 360 SDGNDRFFRD LLLLVNNTRI FFPKESPESA SAMELRQLVL KEMMSKKKQK TDAKLTEKQT 420 SSKSTNLPPK RAAEPPDSLL LKPKLSGPII VCRKRSSITA KAAGSSSGAD RRKEQQTEVK 480 NSEKVIEETR DTPKRSRDGF PLISKKKGKN IRGNTSEVNS NQDQAKTPAN DASDSKSDKK 540 KKLTEAEEKK QSAAKFLNRM KRTSSASNNE PLLNTLKSTG GGGSGGGGGG SENDGKGGGG 600 GEQKKGGGVK GGGGDGKKDQ AKKGSGGRQV KEQGSPAKRS VGRPPKRAAA PPPMAATLGK 660 RNRDSGESET LGSKQTKKRS KRFSGQLMRN N

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence

MAKSDQEREP EDTKDSPPAT AAWGTWEELL LAYAVNRYGT KSWDSISSEL RKRSSAPILL  60
TPHHCEEKYG ELKRRFNQSD DDDVDMDDGS DNTTTAIPWL EELRKLRVLE LQRELENYDL  120
YISSLQLKVK KLTEESEKNG GETKKKADLG QRNEEIELKK AEEAKNETPE PVVSGDEDSD  180
RDNQSVNGSN GNLETGVEKS ENENENEASP GDEKPESAAL SPVREEDSCN GRPDGKEPVK  240
TEPDGEASEA PESIAESKSE GTMKENSDVQ SSASKSRKER VDRVRRGTSK EDEREIEDQS  300
TDSIPVRSLP LVDFLHKLQK LGSPIFERRL DRQEKLRYKN LIRQHIDYEI LQTRLKEGWY  360
SDGNDRFFRD LLLLVNNTRI FFPKESPESA SAMELRQLVL KEMMSKKKQK TDAKLTEKQT  420
SSKSTNLPPK RAAEPPDSLL LKPKLSGPII VCRKRSSITA KAAGSSSGAD RRKEQQTEVK  480
NSEKVIEETR DTPKRSRDGF PLISKKKGKN IRGNTSEVNS NQDQAKTPAN DASDSKSDKK  540
KKLTEAEEKK QSAAKFLNRM KRTSSASNNE PLLNTLKSTG GGGSGGGGGG SENDGKGGGG  600
GEQKKGGGVK GGGGDGKKDQ AKKGSGGRQV KEQGSPAKRS VGRPPKRAAA PPPMAATLGK  660
RNRDSGESET LGSKQTKKRS KRFSGQLMRN N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	491	496	DTPKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	2e-57	MYB_related family protein