PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975463.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 192aa    MW: 22041.1 Da    PI: 10.0466
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975463.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM135.53.5e-42101472127
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                     ++GfrF Pt+eel+++yLk+k++ ++     ++++vi+++++y++ PwdLp+     ++++e++w+fF++r++k+a+g r++r t+sgyWkatg+
  XP_024975463.1  10 ARGFRFYPTEEELISFYLKHKLHCSNtsriQQIQRVIPQLHVYDFYPWDLPQyageFCDGDEEQWFFFVPRQEKEARGGRPSRLTSSGYWKATGS 104
                     68*******************999887776667778***************645543444788******************************** PP

             NAM  89 dkevlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127
                     +  v+s+    ++ ++g+k+t+vfykgrap+g+kt+W m+ey+
  XP_024975463.1 105 SSIVYSSsssiSSGAIGIKRTMVFYKGRAPTGKKTEWKMNEYK 147
                     *****9866666666***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MDHGEGGVVA RGFRFYPTEE ELISFYLKHK LHCSNTSRIQ QIQRVIPQLH VYDFYPWDLP  60
QYAGEFCDGD EEQWFFFVPR QEKEARGGRP SRLTSSGYWK ATGSSSIVYS SSSSISSGAI  120
GIKRTMVFYK GRAPTGKKTE WKMNEYKAFK KEASSKANSR PKLMQEFSLC RLYIKSKCLR  180
AFDRRPSGVG IS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-63NAC family protein