PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975464.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 189aa MW: 21777.8 Da PI: 10.182

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975464.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.9	1.3e-42	10	144	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ++GfrF Pt+eel+++yLk+k++ ++ ++++vi+++++y++ PwdLp + ++++e++w+fF++r++k+a+g r++r t+sgyWkatg++ XP_024975464.1 10 ARGFRFYPTEEELISFYLKHKLHCSNtsriQQIQRVIPQLHVYDFYPWDLPrEFCDGDEEQWFFFVPRQEKEARGGRPSRLTSSGYWKATGSSSI 104 68*****************999887776667778***********556667888******************************* PP NAM 92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127 v+s+ ++ ++g+k+t+vfykgrap+g+kt+W m+ey+ XP_024975464.1 105 VYSSsssiSSGAIGIKRTMVFYKGRAPTGKKTEWKMNEYK 144 9866666666***************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence
MDHGEGGVVA RGFRFYPTEE ELISFYLKHK LHCSNTSRIQ QIQRVIPQLH VYDFYPWDLP 60 REFCDGDEEQ WFFFVPRQEK EARGGRPSRL TSSGYWKATG SSSIVYSSSS SISSGAIGIK 120 RTMVFYKGRA PTGKKTEWKM NEYKAFKKEA SSKANSRPKL MQEFSLCRLY IKSKCLRAFD 180 RRPSGVGIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-60	NAC family protein