PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975478.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 92aa    MW: 10235.6 Da    PI: 9.366
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975478.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.48.1e-0623591854
                    HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +  ++L++llP    ++s K s + +L+++++Y++sL
  XP_024975478.1 23 QLVSKLQQLLPGTHIQRSNKASASKVLQETCNYVRSL 59
                    55689*******6689*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    
MSSRRSRQSS SGGPRITDDQ IIQLVSKLQQ LLPGTHIQRS NKASASKVLQ ETCNYVRSLH  60
REVDDLSDRL SQLLSTIDAD SPEASIIRSL IM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-28bHLH family protein