PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975497.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 207aa MW: 23920.1 Da PI: 6.3088

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975497.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.3	7.5e-20	54	107	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le+ F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k XP_024975497.1 54 KKRKLSDEQVNLLEQNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWK 107 45689************************************************9 PP
2	HD-ZIP_I/II	121.4	4.6e-39	54	145	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + e++rLe+ev +L+e+l+e XP_024975497.1 54 KKRKLSDEQVNLLEQNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHDSTVLEKCRLETEVLKLKEQLSE 145 9****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence
MTTNMKTQAD DQMVLLSQYY PGIYDQLMPE QGEVVKPRRR RKKSKTDGGS SGMKKRKLSD 60 EQVNLLEQNF GNEHKLESER KDRLASELGL DPRQVAVWFQ NRRARWKSKK LEEEYSKLKS 120 EHDSTVLEKC RLETEVLKLK EQLSEAEKEI NRLVERSDGI SSTSPSSSFS MEAMEPPFLG 180 GFGMEGLENV FCLPENNYIH GLDWLNI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	57	RRRRKKSKTDGGSSGMKKRK
2	39	58	RRRRKKSKTDGGSSGMKKRK
3	40	59	RRRRKKSKTDGGSSGMKKRK
4	41	60	RRRRKKSKTDGGSSGMKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	5e-57	HD-ZIP family protein