PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975542.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 362aa    MW: 40802 Da    PI: 8.8361
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975542.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001126149123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C +Cg+ F  + +L++H+++ H
  XP_024975542.1 126 HPCLNCGEIFQKPGLLEQHQSLkH 149
                     78******************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MATIRPFLSN FITLLFILLH LGCFIIFPTS RHHRQRPKPA RKPPSPPRLR RISSPKLKRH  60
KSLSSTWSFF KRIFSSKSTS QIIDGNSSIF HQIPSPASST RSISIIQPDT QITTRPDSLT  120
DSDYIHPCLN CGEIFQKPGL LEQHQSLKHA VCELLDEDPG KNIVQIIFTT GWLGKNPLIN  180
RVMKIHNSPK ILTRFEEYRE IVKSKAARYG GVRRRDERCI ADGNELLRFH CATFLCDLGQ  240
NGNSSICSHQ YCSVCGIIRA GFSSKMDGIS TLSTSWKGHV ALPEDIEEEF RFMHVKRAML  300
VCRVIAGRVG CDPEMGDKDD PGYDSLVGRE TGGTESKLDD EDELIVFNPR AVLPCFVIAY  360
TV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-107C2H2 family protein