PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975612.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 363aa MW: 40608.5 Da PI: 7.0342

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975612.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	86.9	1.7e-27	141	196	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK+vk se pr+YYrC++++Cp++kkv + d+++ ei+Y+g+Hnhe XP_024975612.1 141 DGYNWRKYGQKQVKASELPRNYYRCSQTNCPMTKKVGHFL-DGQISEIIYNGHHNHE 196 9************************************9.*************8 PP
2	WRKY	97.7	7.3e-31	271	329	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vkg+++prsYYrCt gC+v+k+ver+ dpk v++tYeg+H+h+ XP_024975612.1 271 LDDGFKWRKYGQKAVKGTTYPRSYYRCTNVGCKVRKHVERDLADPKSVVTTYEGRHKHD 329 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MAETGGALPP QRRVPPMTIT LPPRSSADSF LNATEVSPGP LTFVSNFFSD HYADGDIQSF 60 SQILAEIVPF PAVQTPTTTP VSRPENGPFL VAALKEEPQT TQISDADDSS WIESYSVSES 120 CNPEPVIMGG STFSVAKAVC DGYNWRKYGQ KQVKASELPR NYYRCSQTNC PMTKKVGHFL 180 DGQISEIIYN GHHNHEPPRT CKRANDGAAV DKPVDSYEQV DHLIANGVAG DDCDEKRRKT 240 KVETEYGSWP SRITVSEPKI VVQTRSEVDI LDDGFKWRKY GQKAVKGTTY PRSYYRCTNV 300 GCKVRKHVER DLADPKSVVT TYEGRHKHDI PVVAKRSNRK EIDFKSEIPV VLHLEEDQIT 360 NLR

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MAETGGALPP QRRVPPMTIT LPPRSSADSF LNATEVSPGP LTFVSNFFSD HYADGDIQSF  60
SQILAEIVPF PAVQTPTTTP VSRPENGPFL VAALKEEPQT TQISDADDSS WIESYSVSES  120
CNPEPVIMGG STFSVAKAVC DGYNWRKYGQ KQVKASELPR NYYRCSQTNC PMTKKVGHFL  180
DGQISEIIYN GHHNHEPPRT CKRANDGAAV DKPVDSYEQV DHLIANGVAG DDCDEKRRKT  240
KVETEYGSWP SRITVSEPKI VVQTRSEVDI LDDGFKWRKY GQKAVKGTTY PRSYYRCTNV  300
GCKVRKHVER DLADPKSVVT TYEGRHKHDI PVVAKRSNRK EIDFKSEIPV VLHLEEDQIT  360
NLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	5e-70	WRKY family protein