PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975621.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 231aa    MW: 25679.1 Da    PI: 7.9914
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.18.7e-312101195
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++Cvl+p++     p++q+ ++ +v+k+FG++ ++++++a+p+++r+ +++sl++eA  r+ +Pv+Gavg++++++++++q+
  XP_024975621.1   2 SCNGCRVLRKGCSENCVLRPCLqwiqtPESQAYATVFVAKFFGRAGLMSFISAVPDNQRQSLFQSLLFEAAGRTVNPVNGAVGLLWTGNWHVCQA 96 
                     6********************************************************************************************** PP

          DUF260  91 kaela 95 
                     ++e+ 
  XP_024975621.1  97 SVETI 101
                     99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MSCNGCRVLR KGCSENCVLR PCLQWIQTPE SQAYATVFVA KFFGRAGLMS FISAVPDNQR  60
QSLFQSLLFE AAGRTVNPVN GAVGLLWTGN WHVCQASVET ILRGGTLRPI PELLNGHPAT  120
PELGDSSETD VMCTDMFQLQ DPITHSRSKV QKRRRSYEPQ SSMTQLQDLD LNLNQSFLAK  180
KGKPEKQRLG SPSMNSEDSV TTTCLDAVFR DYNHNPRGRG DGEPQILNLF N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152183KRRRSYEPQSSMTQLQDLDLNLNQSFLAKKGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-76LBD family protein