PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975653.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 236aa    MW: 26161.2 Da    PI: 8.7486
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.4e-08127167954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  XP_024975653.1 127 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAAHYMKFL 167
                     699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MEMMPMMMEL DELPESFPLP FQDLSDSPLV EFSSESSTSN HPTLPLPPVI YRHPVPPVIN  60
MPSPQIRTLH DFPRGGWFQQ KPDTVEAMRE MIFRMAALQP VQIDPESVKP PKRRNVKISK  120
DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA AHYMKFLKKQ VQSLEQAAAA  180
GGGGGDLPTK TPPPPGVNAV GCRTTGTNHH AISNNLIRAC GTDQASPMIG SMELLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.16e-38bHLH family protein