PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975699.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 195aa    MW: 21860.3 Da    PI: 10.0237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975699.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61e-08114154954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++Le+Av Y+k L
  XP_024975699.1 114 ARHRRERISERIRILQRLVPGG-----TKMDTASMLEEAVLYMKFL 154
                     699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MMTVMMEFDN LPDPFSIPFQ NLSSSSSMEF SGGSSTTNHP TPSPLQPSFY HHPVPPPPPP  60
PFKTLYKPDS MEAMREMIYQ MAALQPAVQI DPESVKPPKR RNVKISKDPQ SVAARHRRER  120
ISERIRILQR LVPGGTKMDT ASMLEEAVLY MKFLKKQVQA LKQAATTGGG MAAPVKMEGN  180
VDGLLLHHRY DQSSW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-36bHLH family protein