PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975713.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 356aa MW: 38711.4 Da PI: 9.1429

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975713.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.9	5.9e-12	54	80	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtGtC yG++C+++H+p XP_024975713.1 54 PGMADCAYYMRTGTCGYGSKCRYNHPP 80 57899********************97 PP
2	zf-CCCH	42	1.6e-13	102	128	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtGtCk+G++CkF+H++ XP_024975713.1 102 PGEPPCQYYLRTGTCKFGASCKFHHPR 128 5899*********************96 PP
3	zf-CCCH	37.8	3.2e-12	149	174	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ XP_024975713.1 149 DEKECSYYLKTGQCKFGITCKFHHPQ 174 6789********************97 PP
4	zf-CCCH	40.2	5.7e-13	301	327	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++Ck++H+p XP_024975713.1 301 PGQPECQYYMKTGDCKFGASCKYHHPP 327 5789*********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MELYGRSTGR NGSQPDHTQQ QSEWIQPGAE TGLEESMRRL GLWXGRGEFY PERPGMADCA 60 YYMRTGTCGY GSKCRYNHPP DRSSSAGGAA RSAGGGAYPE RPGEPPCQYY LRTGTCKFGA 120 SCKFHHPRHA GGSLSNVPLN TYGYPLRPDE KECSYYLKTG QCKFGITCKF HHPQPTGESM 180 PASARPFYSV QSPSAPSPEQ YVGPSAGYRV ARPPLVPGSY APGAYGPILL SPGMVPLQNW 240 SPYSGRVSPV LSPGAQPSMA AGSVYGVNSS APPFAAPYRP LPPSPGPLSS SQTERVFPER 300 PGQPECQYYM KTGDCKFGAS CKYHHPPDWV LSKANCVLSA IGLPLRPKLF NLWRHR

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MELYGRSTGR NGSQPDHTQQ QSEWIQPGAE TGLEESMRRL GLWXGRGEFY PERPGMADCA  60
YYMRTGTCGY GSKCRYNHPP DRSSSAGGAA RSAGGGAYPE RPGEPPCQYY LRTGTCKFGA  120
SCKFHHPRHA GGSLSNVPLN TYGYPLRPDE KECSYYLKTG QCKFGITCKF HHPQPTGESM  180
PASARPFYSV QSPSAPSPEQ YVGPSAGYRV ARPPLVPGSY APGAYGPILL SPGMVPLQNW  240
SPYSGRVSPV LSPGAQPSMA AGSVYGVNSS APPFAAPYRP LPPSPGPLSS SQTERVFPER  300
PGQPECQYYM KTGDCKFGAS CKYHHPPDWV LSKANCVLSA IGLPLRPKLF NLWRHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-134	C3H family protein