PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975759.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 255aa    MW: 29733.6 Da    PI: 9.1898
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975759.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.32e-4271392127
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                     +pGfrF Pt+eel+++yLk+ +eg++     +++vi+++++y++ PwdLp+     +k++ ++w+fF++r++k+++g r++r tksgyWkatg+ 
  XP_024975759.1   7 TPGFRFYPTEEELITFYLKHTIEGTPrllQAINRVIPHLHVYDFYPWDLPQyageLCKGDPEQWFFFIPRQEKETRGGRTSRLTKSGYWKATGSP 101
                     79************************886566678***************645654455777********************************* PP

             NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                       v+s++++ + +k+t+vfy+grap+g+kt+W m+ey+
  XP_024975759.1 102 SVVYSSGNRRIAIKRTMVFYNGRAPTGKKTKWKMNEYK 139
                     *************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MEGGMVTPGF RFYPTEEELI TFYLKHTIEG TPRLLQAINR VIPHLHVYDF YPWDLPQYAG  60
ELCKGDPEQW FFFIPRQEKE TRGGRTSRLT KSGYWKATGS PSVVYSSGNR RIAIKRTMVF  120
YNGRAPTGKK TKWKMNEYKA FQEEVSSTTK PKIKLMQELS ICRVYIKSNC LRAFDRRPSG  180
VVVTEPRPIQ QSLHNNDHHA TTLTYSNHRA AIERTICSSD NNYNSSQDHT SSSGLMREFD  240
DQPLWDWEEH YYSLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-78NAC family protein