PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975776.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 540aa    MW: 61113 Da    PI: 6.4771
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975776.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS331.21.9e-1011595383374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++Lle+A+av++++  + q+lL+ l+el+sp+gd  q+l +yf++AL +r+++s+++ y++l + +++  + +++ + +  f+evsP+ +f+h++
  XP_024975776.1 159 DVLLEAARAVAEKNSGRLQQLLWMLNELSSPYGDVDQKLSSYFLQALFSRMTDSGDRSYRTLLSASDKMCSFESTRKLVLKFQEVSPWTTFGHVA 253
                     68**********************************************************998877774443333344444************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlva 183
                     +N aI+ea++ge+++Hi+D + ++++QWp+Ll+a+a+R++++p+lR+T+v++ + g          ++ ++e+g+r++kfA+ +gvpf+f+v+++
  XP_024975776.1 254 CNAAIMEAFDGESKLHIVDVSNTYCTQWPTLLEAIATRTDETPHLRLTTVVATKLGggatvsgsaVQKVMREIGNRMEKFARLMGVPFKFHVIHH 348
                     ****************************************************88779999999999999************************88 PP

            GRAS 184 k.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdslea 273
                     + +l++l+l++L ++ +Eala+nl   l ++       +++rd ++++++sl+Pk++++v++ead++ +    +F+++f e+l+++ + f++l++
  XP_024975776.1 349 TgDLSELNLSQLGLQDDEALAINLNGTLRSVS------NHRRDYLISTFRSLNPKIITIVDEEADLEVGtdgfEFVRGFQECLRWFRVYFEALDQ 437
                     78************************999997......66799********************98844434669********************* PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367
                     ++p++s+er ++Er+  gr++++++ac+ ae+ er+et+++W++rl+++GF+pv++s+++ +++++llr++  ++ ++  e  + ++l+Wk+ p+
  XP_024975776.1 438 SFPKTSNERLMLERA-AGRAVMDLIACSPAESMERRETAARWSSRLHASGFGPVSYSDEVCDDVRALLRRYReGWSMNPSEAAAGIFLTWKETPV 531
                     ***************.********************************************************556566679999999******** PP

            GRAS 368 vsvSaWr 374
                     v++SaW+
  XP_024975776.1 532 VWASAWK 538
                     ******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    
MDTLFRLVSL QKQPSHHHHH HHHPLTNSTS RTNSNSSKSS NHHTTTPPFH FNYQQEEDQE  60
ECFNFFMDEE DFSSSSSRHH HHNQYYSSQQ TPFHHQSSNT PTPTTSTTAT PPPLSHYGAF  120
SSSEHQQSSD PNINYSYSPA RDVTMEFSNS FTVNSWASDV LLEAARAVAE KNSGRLQQLL  180
WMLNELSSPY GDVDQKLSSY FLQALFSRMT DSGDRSYRTL LSASDKMCSF ESTRKLVLKF  240
QEVSPWTTFG HVACNAAIME AFDGESKLHI VDVSNTYCTQ WPTLLEAIAT RTDETPHLRL  300
TTVVATKLGG GATVSGSAVQ KVMREIGNRM EKFARLMGVP FKFHVIHHTG DLSELNLSQL  360
GLQDDEALAI NLNGTLRSVS NHRRDYLIST FRSLNPKIIT IVDEEADLEV GTDGFEFVRG  420
FQECLRWFRV YFEALDQSFP KTSNERLMLE RAAGRAVMDL IACSPAESME RRETAARWSS  480
RLHASGFGPV SYSDEVCDDV RALLRRYREG WSMNPSEAAA GIFLTWKETP VVWASAWKPI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein