PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975811.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 255aa    MW: 29758 Da    PI: 7.6832
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975811.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1423.4e-4461391127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                     + pGfrF Pt+eel+++yLk+k+eg++    ++++vi+++++y++ PwdLp+    +++++ ++w+fF++r++k+a+g r++r t+sgyWkatg+
  XP_024975811.1   6 MVPGFRFYPTEEELITYYLKHKIEGTPslqQDIDRVIPQLHVYDFYPWDLPQyageRCQGDPEQWFFFIPRQEKEARGGRPSRLTSSGYWKATGS 100
                     579***********************9887777789***************646666666778******************************** PP

             NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      + v+ ++++++g+k+tLvfy+grap+g+kt+W m+ey+
  XP_024975811.1 101 PRIVYFSSNRAIGIKRTLVFYNGRAPNGTKTKWKMNEYK 139
                     **************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MEGGGMVPGF RFYPTEEELI TYYLKHKIEG TPSLQQDIDR VIPQLHVYDF YPWDLPQYAG  60
ERCQGDPEQW FFFIPRQEKE ARGGRPSRLT SSGYWKATGS PRIVYFSSNR AIGIKRTLVF  120
YNGRAPNGTK TKWKMNEYKA FQQEPSNTNP KPKLIEEFSL CRVYVKSNCL RSFDRRPPGV  180
TINEQVPIPQ PFHNNEHHAT TSTHLNNRSS RPERTSSSDH SYNSSDDQTG NDSHSTMKTD  240
DQLPLWEWEE HQTWF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.18e-73NAC family protein