PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975812.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 252aa    MW: 29494.8 Da    PI: 8.0974
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM143.71.1e-4461361127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     + pGfrF Pt+eel+++yLk+k+eg++    ++++vi+++++y++ PwdLp ++++++ ++w+fF++r++k+a+g r++r t+sgyWkatg+ + 
  XP_024975812.1   6 MVPGFRFYPTEEELITYYLKHKIEGTPslqQDIDRVIPQLHVYDFYPWDLPrERCQGDPEQWFFFIPRQEKEARGGRPSRLTSSGYWKATGSPRI 100
                     579***********************9887777789***************778888999*********************************** PP

             NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                     v+ ++++++g+k+tLvfy+grap+g+kt+W m+ey+
  XP_024975812.1 101 VYFSSNRAIGIKRTLVFYNGRAPNGTKTKWKMNEYK 136
                     ***********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MEGGGMVPGF RFYPTEEELI TYYLKHKIEG TPSLQQDIDR VIPQLHVYDF YPWDLPRERC  60
QGDPEQWFFF IPRQEKEARG GRPSRLTSSG YWKATGSPRI VYFSSNRAIG IKRTLVFYNG  120
RAPNGTKTKW KMNEYKAFQQ EPSNTNPKPK LIEEFSLCRV YVKSNCLRSF DRRPPGVTIN  180
EQVPIPQPFH NNEHHATTST HLNNRSSRPE RTSSSDHSYN SSDDQTGNDS HSTMKTDDQL  240
PLWEWEEHQT WF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-69NAC family protein