PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975862.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 287aa    MW: 32349.2 Da    PI: 6.9048
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.8e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl
   XP_024975862.1 15 KGPWTTEEDAKILAYVANHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding47.54.2e-1570111346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T+ E++l++++++  G++ W++Ia+ ++ gRt++++k++w++
   XP_024975862.1  70 SFTAHEEDLILRYHQAIGSR-WSLIAKQLP-GRTDNDVKNHWNT 111
                      79******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MGRRPPCCDK SHVKKGPWTT EEDAKILAYV ANHGIGNWTL VPQKAGLNRC GKSCRLRWTN  60
YLRPDLKHDS FTAHEEDLIL RYHQAIGSRW SLIAKQLPGR TDNDVKNHWN TKLKKKLSKM  120
GIDPITHKPF RQLLSDYGNI NEIIPKNTTI SDHRHHEPSD FSRADSSLTT MDPMNLLTAH  180
FQVINEAASS STSSPATKVQ VNLPSSPSIW SDYLIGDQEQ ECTNEPDLGI VSTNGENPNN  240
YNGLGVDQSK NTLEVASTSV SFVESILNRD REMQMDFPQL LDGYSEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.14e-82MYB family protein