PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975887.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 221aa MW: 24341.5 Da PI: 6.7695

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.3	6e-39	11	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC++dC++apyf++eq p++fa++hk+FGasnv+kll+++ +r +++ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l XP_024975887.1 11 PCGACKFLRRKCTADCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLHHVAVADRCETVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQL 105 7***********************99***************************************************************** PP DUF260 95 allkee 100 ++k++ XP_024975887.1 106 MQVKAQ 111 999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence
MATVAGTTGS PCGACKFLRR KCTADCIFAP YFCSEQGPAR FAAIHKVFGA SNVSKLLHHV 60 AVADRCETVV TIAYEAQARI RDPVYGCVSH IFALQQQVAC LQAQLMQVKA QMAAQGYMDS 120 RNLENQWSAN MAAGAMAYQD YMNGTGNFMN CNISPQSSME SIDHNNEGNM GMQEIQSRDD 180 DHHHDHGFSF QPAAAVYSNK KRLSDSDLGE LQELAVRMMR N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	1e-59	LBD family protein