PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975896.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WOX

Protein Properties

Length: 300aa MW: 33530.6 Da PI: 7.029

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.6	5.9e-20	25	85	3	57
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+t+t++q+++L+el+++ r p+a++++++A++l +++ ++V++WFqN++a+e++ XP_024975896.1 25 SRWTPTSDQIRILKELYYNngIRSPTADQIQRIAARLrhygKIEGKNVFYWFQNHKARERQ 85 8***************8567***********************************97 PP
2	Wus_type_Homeobox	112.8	1.8e-36	23	87	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RWtPt++Qi+iL+ely+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ XP_024975896.1 23 SSSRWTPTSDQIRILKELYYnNGIRSPTADQIQRIAARLRHYGKIEGKNVFYWFQNHKARERQKK 87 789*************9779***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
METTQQDQDL GNNRNSSYLC RQSSSRWTPT SDQIRILKEL YYNNGIRSPT ADQIQRIAAR 60 LRHYGKIEGK NVFYWFQNHK ARERQKKRFI PTPAPPPPST TTATTLLPSP FSDHHHHMHI 120 QSHHPTHFYN QQNHKLYTTH HISPPEAGSS SSQGFMPVGC SYGSVAMEKS FRECSISPGE 180 SRVAGGTDHD FRSWVGVDSY SLDKTKPEYE IPEEDDDGGG GGGELSTQIE TLPLFPIHGG 240 TTTTTTTTTG GNHHDIFNVK AAVDSSSEHS NGGYYTGGNW FRSDGRTSLE LSLNSYGYYN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	1e-40	WOX family protein