PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975927.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 360aa MW: 40435.3 Da PI: 6.8372

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975927.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	105.7	7.3e-33	53	185	2	114
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak++i+el+ ++ ++ s+ + +as++s++ XP_024975927.1 53 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKHEIDELPPLQIPPGSFGPGLQAMLNASSQSERmegvktsn 147 689*************************************************************7777755533333333332222222343344 PP TCP 89 ...............kaaksaakskksqksaasalnlakes 114 k a + +++++++ +n+++++ XP_024975927.1 148 ssglnwedywnpdksK---VIARETNEDHDQEDSRNKHDDH 185 4456677777664331...2222333333333333333322 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MNISNLRESD YETKQEGGND GGNKINIVPK PNLTTSSWSR LKDPRIVRVS RAFGGKDRHS 60 KVCTVRGLRD RRVRLSVPTA IQLYDLQDRL GLNQPSKVVD WLLDAAKHEI DELPPLQIPP 120 GSFGPGLQAM LNASSQSERM EGVKTSNSSG LNWEDYWNPD KSKVIARETN EDHDQEDSRN 180 KHDDHHHHHG TFVQSSNFFE RNPNSSSLPG LLNNVVPNNS FLKWDPSNLS LSQFGSYGSV 240 GNHHQDHDTV HNFNMNVSSI NHPSSQLLLY PPPPAPPPRP QTQSYFPSHD HNSGEFDPKQ 300 QLNFQMLSSS STSSHNPLSS SSNFTPSLYT INQEMRPFHL SMNPKFFSSD DNGGHDESNK

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MNISNLRESD YETKQEGGND GGNKINIVPK PNLTTSSWSR LKDPRIVRVS RAFGGKDRHS  60
KVCTVRGLRD RRVRLSVPTA IQLYDLQDRL GLNQPSKVVD WLLDAAKHEI DELPPLQIPP  120
GSFGPGLQAM LNASSQSERM EGVKTSNSSG LNWEDYWNPD KSKVIARETN EDHDQEDSRN  180
KHDDHHHHHG TFVQSSNFFE RNPNSSSLPG LLNNVVPNNS FLKWDPSNLS LSQFGSYGSV  240
GNHHQDHDTV HNFNMNVSSI NHPSSQLLLY PPPPAPPPRP QTQSYFPSHD HNSGEFDPKQ  300
QLNFQMLSSS STSSHNPLSS SSNFTPSLYT INQEMRPFHL SMNPKFFSSD DNGGHDESNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	2e-47	TCP family protein