PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975985.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 196aa    MW: 22817.5 Da    PI: 8.7281
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975985.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l d+++++G  +W+  +++ g+ R++k+c++rw +yl
   XP_024975985.1 14 KGAWSEEEDNKLRDYIERYGHWNWRELPKYAGLSRCGKSCRLRWMNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding55.31.5e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++++++ ++ +G++ W+tIa+ ++ gR+++++k++w+++l
   XP_024975985.1  67 RGNFSKEEEDIIIKFHQDMGNK-WSTIAAQLP-GRSDNEIKNHWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MVRAPCIDKN GMKKGAWSEE EDNKLRDYIE RYGHWNWREL PKYAGLSRCG KSCRLRWMNY  60
LRPSVKRGNF SKEEEDIIIK FHQDMGNKWS TIAAQLPGRS DNEIKNHWHT HLKKRSTKHN  120
HQVIHQVKEE PNSNIQRIIN FAGLPPSFVS TSSDNRVSNE STASRGVSDD STSGSCVQQR  180
LLIDLNQEYV ESWEEC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.11e-58MYB family protein