PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975987.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26049.6 Da    PI: 6.6804
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975987.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.82.1e-261767151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + r vtfskRr g++KKAeELSvLCda+vavi+fss++kl+ yss
  XP_024975987.1 17 KKIDNATARRVTFSKRRRGLFKKAEELSVLCDADVAVILFSSNDKLFHYSS 67
                    68***********************************************96 PP
2K-box53.79e-191001791998
           K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +++a+L ke+ +   e+R+l Ge+L+ L ++eL+qLe+ Le +l+++ +kK e ++++i++lq+ke +l een +Lr++l
  XP_024975987.1 100 TNYANLSKEVAERTLELRRLRGEELQGLGIEELHQLEKSLEAGLSRVVAKKGEAIMNEINHLQEKEVKLMEENDKLRQEL 179
                     6789999999999999*************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MLCCTGGMMA REKVQIKKID NATARRVTFS KRRRGLFKKA EELSVLCDAD VAVILFSSND  60
KLFHYSSSSM KEVLERRSLH SRNLEKLNQP SLELQLVEDT NYANLSKEVA ERTLELRRLR  120
GEELQGLGIE ELHQLEKSLE AGLSRVVAKK GEAIMNEINH LQEKEVKLME ENDKLRQELL  180
KISSAQKPGV GHDSGDSGES SESTNICNSA GPPQDYESSG TSLKLGLPYS GWI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-74MIKC_MADS family protein