PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975988.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 192aa    MW: 22044.3 Da    PI: 7.9647
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975988.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.31.5e-261767151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + r vtfskRr g++KKAeELSvLCda+vavi+fss++kl+ yss
  XP_024975988.1 17 KKIDNATARRVTFSKRRRGLFKKAEELSVLCDADVAVILFSSNDKLFHYSS 67
                    68***********************************************96 PP
2K-box53.88.4e-191001781997
           K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +++a+L ke+ +   e+R+l Ge+L+ L ++eL+qLe+ Le +l+++ +kK e ++++i++lq+ke +l een +Lr++
  XP_024975988.1 100 TNYANLSKEVAERTLELRRLRGEELQGLGIEELHQLEKSLEAGLSRVVAKKGEAIMNEINHLQEKEVKLMEENDKLRQE 178
                     679999999999999**************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MLCCTGGMMA REKVQIKKID NATARRVTFS KRRRGLFKKA EELSVLCDAD VAVILFSSND  60
KLFHYSSSSM KEVLERRSLH SRNLEKLNQP SLELQLVEDT NYANLSKEVA ERTLELRRLR  120
GEELQGLGIE ELHQLEKSLE AGLSRVVAKK GEAIMNEINH LQEKEVKLME ENDKLRQEQA  180
WSLSLSLYTC FS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-66MIKC_MADS family protein