PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976134.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 322aa    MW: 35111.9 Da    PI: 9.2169
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976134.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-13124168347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
   XP_024976134.1 124 PWTEDEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 168
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MLQSQSQSQS PSQSQSRCCS QCGTNGHNSR TCSSAADDSS SDGSGIGAGE IMLFGVRVKV  60
DPMRKSVSMN NLSQYEQPAT RESSNNNIDV AAVAAVAADT GYASADDAVR NQSNGSRERK  120
RGVPWTEDEH KLFLLGLQKV GKGDWRGISR NFVKTRTPTQ VASHAQKYFL RRSNLNRRRR  180
RSSLFDITTD SVPAVSTEEQ QVPEDNKGQD LLQPSLQQIS PRNGFPTTTF PVAVGSVLPP  240
VQLANVDQDT SESMLLGRPN PMFPTPNPST MVDLNLNKRY ETDPLPLSLN LSLSFGHNQS  300
SQRRSSPYLS GFTTGDGMVR VA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.29e-55MYB_related family protein