PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976249.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 200aa MW: 23818.9 Da PI: 7.388

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976249.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.9	6.1e-17	72	126	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+++++ +q++ Le+ Fe+++++ +++ + Ak+l+L+ rqV +WFqNrRa k XP_024976249.1 72 KKKRRLSVDQVKFLERSFEEKNKLEPDRKIQVAKELNLQPRQVEIWFQNRRACCK 126 56779**********************************************9665 PP
2	HD-ZIP_I/II	122.1	2.7e-39	72	163	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kkrrls +qvk+LE+sFee++kLep+rK ++a+eL+lqprqv++WFqnrRA ktkqlEkdye L ++yd+lk+e + L+k++++L++e++ XP_024976249.1 72 KKKRRLSVDQVKFLERSFEEKNKLEPDRKIQVAKELNLQPRQVEIWFQNRRACCKTKQLEKDYEILNSSYDKLKSEFDCLQKHNDKLKHEVE 163 59**************************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence
MEGRVVFEAL LQTQRFDFVS DGFDSPWISN SFQDNPSNLD SSIGKKTNTK KRLSEQEENS 60 DEDYEKCFRP MKKKRRLSVD QVKFLERSFE EKNKLEPDRK IQVAKELNLQ PRQVEIWFQN 120 RRACCKTKQL EKDYEILNSS YDKLKSEFDC LQKHNDKLKH EVEMLKEKLH QREKGEKDSI 180 PNEFPTKELD SNAQEPKPLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	76	KKKRR
2	72	77	KKKRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-37	HD-ZIP family protein