PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976317.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Dof

Protein Properties

Length: 277aa MW: 30554.8 Da PI: 9.5271

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976317.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.4e-39	47	105	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++lkcprCds+ntkfCyynny+l+qPryfCk+CrryWt+GGalrnvP+Ggg+rknk + XP_024976317.1 47 NHHLKCPRCDSSNTKFCYYNNYNLTQPRYFCKTCRRYWTRGGALRNVPIGGGCRKNKGT 105 6789****************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MIDQKFFVGG ATGTTRHPNI STNYSDHSPP PPPPPPPSST TNLNSENHHL KCPRCDSSNT 60 KFCYYNNYNL TQPRYFCKTC RRYWTRGGAL RNVPIGGGCR KNKGTTIASA LAKQISSTEN 120 LKALISSDLG KSDIINSLDE RSKPILWASS PQTSHLLSLL RSTHNHNPNP NPNFTSNANT 180 FNPSWRINSQ MVRDQQQENG GIITGHEGRI TGNNPAQMHQ QLRSSPSNYY HHDQAVAPMT 240 NPSSSTSAST VANGESGYWN LMIPWSDLSI TNNAYAP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	4e-34	Dof family protein