PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976320.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 236aa    MW: 26053 Da    PI: 9.9128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-2092142256
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g+
  XP_024976320.1  92 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRGA 142
                     69*******.**********32....25**************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MNIYFQALQH YQTPSFSHPN QSPETYFSSE NYHDNHPTTA LEGIAAVVGE HVLFGKTAPS  60
TTTTLIATEN EDNKQSKSLR SDKNGGGAAE KSYRGVRKRP WGRWSAEIRD RIGRCRHWLG  120
TFDTAEEAAR AYDAAARRLR GAKARTNFEI PSVFPPSAAA AATVETKKKG GSSSNKCHVV  180
TSVDQLFSNS SLMMMKSKMM NDQETVNHHN NAINQELDLN LGVGFNKKAR TSSMLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-25ERF family protein