PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976323.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 214aa    MW: 24173.9 Da    PI: 8.9308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976323.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-057496123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++Cg+ F ++  L  H++ H
  XP_024976323.1 74 FSCNYCGRKFYSSQALGGHQNAH 96
                    89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MESMPSEPCV LRHDINSSHP EEEEDDHGNP KLDLRLSLED SDRNPNPELN RDKFLSGNRM  60
EVVTFDKDRK QKRFSCNYCG RKFYSSQALG GHQNAHKRER TVSMRKNKVQ SHVEDGCTQR  120
YPTNMSSLGV KVHSMVVHKP TSVPTFSPFS NAGKYLGGQP TIGRFMSPEH HHVGSSSGWD  180
TRGSAMRTRR DSGAIHSQNG QDDQLPKLDL SLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-21C2H2 family protein