PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976342.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YC
Protein Properties Length: 236aa    MW: 25866 Da    PI: 5.0067
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.53.1e-56471511102
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl
  XP_024976342.1  47 QLQMFWNYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 141
                     89*****998899********************************************************************************** PP

           NF-YC  93 vdivprdelk 102
                     vdivprde+k
  XP_024976342.1 142 VDIVPRDEIK 151
                     *******975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MENTTTTTTT TTTNHQPSAA TPPPPQQPSP FPPQQPYQHL LQQQHQQLQM FWNYQRQEIE  60
QVNDFKNHQL PLARIKKIMK ADEDVRMISA EAPILFAKAC ELFILELTIR SWLHAEENKR  120
RTLQKNDIAA AITRTDIFDF LVDIVPRDEI KDDVSVAGGG LGGMVGSTAS GLPYYYPPMG  180
QPAPPPPGVT MGRPAVDPTG MYGTPSQAWQ SVWQTADDGS YGSGGSGGQG GFDGQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-81NF-YC family protein