PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976347.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 546aa    MW: 61296.9 Da    PI: 7.7739
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976347.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.86.7e-1091725451374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal...ppsetseknsseelaalklfsevsPilk 92 
                     lv+lL++cAeav+ +d++ a++lLa+l+  a   g+++qR+a++f+++L  rla   + l +     p+++ ++   +++  a++l +e++P ++
  XP_024976347.1 172 LVQLLVSCAEAVACRDKTHASNLLAELRADALVFGSSFQRVASCFMQGLTDRLAMV-QPLGAVGlvaPARNVNPVAFERKDEAFRLVYETCPHIR 265
                     689***************************************************84.444333311244445555577888999*********** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                     f+h +aN +Ilea+ege+ vH++D++++    +G QW aL+q+La R+   + p++lRiT+vg+       +  ++g+ L+ +A e ++++ef++
  XP_024976347.1 266 FGHYVANLTILEAFEGESYVHVVDLGMTlglrHGQQWRALIQSLAGRAnqtRTPHRLRITAVGP----CVGQFVTIGNELETYAGEHNINLEFSA 356
                     ************************98652222889************96555588*********....9************************** PP

            GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                      ++++le+l+ e++++ ++E+l++n++lqlh +++es    +   +vL++v +lsPk vv+veq+++hn++ Fl rf+e+l+yysa+fd+l+a l
  XP_024976347.1 357 -IESSLETLKREDIKTYKNEVLVINSILQLHCVVKESRGALN---SVLQIVHGLSPKAVVLVEQDSNHNGPFFLGRFMESLHYYSAIFDALDAML 447
                     .799******************************88877777...8************************************************* PP

            GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                     p+ + +r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++   a qak+ l+k +  dgy++ ee+g+lvlgWk+rp+v+
  XP_024976347.1 448 PKYDTKRAKIEQFYFAEEIKNIVSCEGPNRVERHERVDQWRRRMSRAGFQAAPIK--LAVQAKHWLEKLEiCDGYTIAEEKGCLVLGWKSRPIVA 540
                     *****************************************************96..678*********************************** PP

            GRAS 370 vSaWr 374
                     vS+W+
  XP_024976347.1 541 VSCWK 545
                     ****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    
MTISMAPVGF LGNRLYNEQI FDRLKMGVHG VDPRFRLGGT KRKVEAFSDL GTTELPVNDE  60
DYDGDGGRNL SISSFHHRRY LPVLDNPVTG WQLPGSSNGK MKRSKSMPES SFSDNSFAGI  120
HRSSSTNSFP KLRFRDHIWT YTKPYLEAEA IKDAISEYGN VGDDGNKDEM HLVQLLVSCA  180
EAVACRDKTH ASNLLAELRA DALVFGSSFQ RVASCFMQGL TDRLAMVQPL GAVGLVAPAR  240
NVNPVAFERK DEAFRLVYET CPHIRFGHYV ANLTILEAFE GESYVHVVDL GMTLGLRHGQ  300
QWRALIQSLA GRANQTRTPH RLRITAVGPC VGQFVTIGNE LETYAGEHNI NLEFSAIESS  360
LETLKREDIK TYKNEVLVIN SILQLHCVVK ESRGALNSVL QIVHGLSPKA VVLVEQDSNH  420
NGPFFLGRFM ESLHYYSAIF DALDAMLPKY DTKRAKIEQF YFAEEIKNIV SCEGPNRVER  480
HERVDQWRRR MSRAGFQAAP IKLAVQAKHW LEKLEICDGY TIAEEKGCLV LGWKSRPIVA  540
VSCWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-71GRAS family protein