PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976355.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 393aa MW: 45035.4 Da PI: 6.3034

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976355.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.3e-17	165	211	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l++ v+++G + W+ Ia+++ gR +kqc++rw+++l XP_024976355.1 165 KGQWTREEDRILKEMVEKYGVRKWSYIAQMLK-GRIGKQCRERWHNHL 211 799**************************9.***********97 PP
2	Myb_DNA-binding	51.2	2.8e-16	218	259	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + WT+eEd +l+ a+++ G++ W+ Ia++++ gRt+++ k++w+ XP_024976355.1 218 DFWTEEEDRILIAAHAEVGNK-WSEIAKKLP-GRTENSTKNHWN 259 67*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MDLLSKNHLN PESEPKSQHE FEFEDDFPME TKGVFQDLHQ LDNISLVGSS FEPDYTNHVT 60 GYDPFGPLPF GVGSNDVDLY EFKPLEHVND GGGMVVSLNH QYKSYMSWGG SDFSTRLGIV 120 ECPIQDAKLM SFFVPDEGSC VTADNGIKKG NRKWCKGKKK TNSSKGQWTR EEDRILKEMV 180 EKYGVRKWSY IAQMLKGRIG KQCRERWHNH LRPDIKKDFW TEEEDRILIA AHAEVGNKWS 240 EIAKKLPGRT ENSTKNHWNA TKRRQYTRRK CRSKWPRPSP ILQNYIKSLN LPRGRMNSNR 300 SNQNHALTTV KPSSSAENQE DFDYNEVPEF AMDEKLLEWD NNIESLLDDV PSINGGGEEV 360 DSYLMASASS SSGLQGEVKK EVDLMEMISQ VNL

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MDLLSKNHLN PESEPKSQHE FEFEDDFPME TKGVFQDLHQ LDNISLVGSS FEPDYTNHVT  60
GYDPFGPLPF GVGSNDVDLY EFKPLEHVND GGGMVVSLNH QYKSYMSWGG SDFSTRLGIV  120
ECPIQDAKLM SFFVPDEGSC VTADNGIKKG NRKWCKGKKK TNSSKGQWTR EEDRILKEMV  180
EKYGVRKWSY IAQMLKGRIG KQCRERWHNH LRPDIKKDFW TEEEDRILIA AHAEVGNKWS  240
EIAKKLPGRT ENSTKNHWNA TKRRQYTRRK CRSKWPRPSP ILQNYIKSLN LPRGRMNSNR  300
SNQNHALTTV KPSSSAENQE DFDYNEVPEF AMDEKLLEWD NNIESLLDDV PSINGGGEEV  360
DSYLMASASS SSGLQGEVKK EVDLMEMISQ VNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	6e-79	MYB family protein